Information for 10-AGGCTGCCTG (Motif 18)

C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G C T A G A T G C T G C A A C T G A G T C A G T C C G A T
p-value:1e-6
log p-value:-1.568e+01
Information Content per bp:1.877
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif284.4
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets46.4 +/- 23.6bp
Average Position of motif in Background52.3 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGGCTGCCTG-
-VBSYGTCTGG
 C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGCTGCCTG----
TGGCAGNCTGCCAG
 C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGGCTGCCTG-
---CTGTCTGG
 C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGGCTGCCTG
-GGCGCGCT-
 C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AGGCTGCCTG--
------GCTGTG
 C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AGGCTGCCTG-
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0154.1_Osr1_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGCTGCCTG----
ACATGCTACCTAATAC
 A C G T A C G T C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGGCTGCCTG-
---TWGTCTGV
 C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGGCTGCCTG--
--ACTTCCTGTT
 C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G A C G T A C G T
A C G T A C G T T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGGCTGCCTG
----TGCGTG
 C G T A A C T G A C T G G T A C A C G T A T C G A G T C A G T C A C G T A C T G
A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G