Information for 11-CCTGCAGCGTTCA (Motif 12)

A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C T G A A T G C A C T G A G T C A C G T A C T G A G T C C T G A A C T G A T C G
p-value:1e-9
log p-value:-2.093e+01
Information Content per bp:1.943
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.2 +/- 19.5bp
Average Position of motif in Background69.6 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCAGCGTTCA
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCAGCGTTCA
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCAGCGTTCA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCAGCGTTCA
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCAGCGTTCA
CCCCCTGCTGTG----
 A C G T A C G T A C G T A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTGCAGCGTTCA
CCTGCTGAGH---
 A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTGCAGCGTTCA----
CGAACAGTGCTCACTAT
 A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCAGCGTTCA-
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PB0118.1_Esrra_2/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTGCAGCGTTCA-----
-GGCGAGGGGTCAAGGGC
 A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCTGCAGCGTTCA
----CAGCC----
 A T G C A G T C A G C T A C T G A G T C C G T A A C T G G T A C A T C G A G C T A C G T A G T C C G T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T