Information for 9-GTSTCTWMAAGKC (Motif 21)

A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G G T A C A G T C C G A T A C G T A C T G C G A T C T G A A C T G C G T A A T G C C G T A A G T C
p-value:1e-10
log p-value:-2.333e+01
Information Content per bp:1.862
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.4 +/- 19.7bp
Average Position of motif in Background61.7 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GTSTCTWMAAGKC
GNCTATAAAAGG-
 A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTSTCTWMAAGKC-
GGGTTACTANAGGTCA
 A C G T A C G T A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

SMAD3/MA0795.1/Jaspar

Match Rank:3
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTSTCTWMAAGKC
-TGTCTAGACG--
 A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTSTCTWMAAGKC----
--GTATAAAAGGCGGGG
 A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GTSTCTWMAAGKC----
--GTATAAAAGGCGGGG
 A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.52
Offset:6
Orientation:forward strand
Alignment:GTSTCTWMAAGKC--
------AAAAGTCAA
 A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GTSTCTWMAAGKC
AGGTCTCTAACC---
 A C G T A C G T A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:8
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----GTSTCTWMAAGKC-
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C A C G T
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.48
Offset:5
Orientation:forward strand
Alignment:GTSTCTWMAAGKC--
-----NTCAAGGTCA
 A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer

Match Rank:10
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:GTSTCTWMAAGKC
-TGTTTACH----
 A C T G A C G T A T C G A C G T G T A C A G C T C G T A G T A C G T C A C G T A A C T G A C T G A G T C
A C G T A C G T A C T G A C G T A C G T A C G T C G T A A G T C G C T A A C G T A C G T A C G T A C G T