Information for 13-GAGGCAGCCA (Motif 12)

A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A
Reverse Opposite:
A G C T C T A G C T A G G A T C A C G T C A T G T G A C A G T C C G A T A T G C
p-value:1e-7
log p-value:-1.807e+01
Information Content per bp:1.818
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.14%
Number of Background Sequences with motif360.2
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets49.3 +/- 29.2bp
Average Position of motif in Background52.5 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGGCAGCCA-
AGGTGNCAGACAG
 A C G T A C G T A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GAGGCAGCCA-
---BCAGACWA
 A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAGGCAGCCA
AGGTGHCAGACA
 A C G T A C G T A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCAGCCA
TGAGTCAGCA-
 A C G T A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAGGCAGCCA
----CAGCC-
 A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCAGCCA
TGACTCAGCA-
 A C G T A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A
A G C T A C T G C G T A A T G C C G A T G T A C C T G A A C T G A T G C G C T A A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GAGGCAGCCA-
TGGCAGNCTGCCAG
 A C G T A C G T A C G T A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGGCAGCCA
ANCAGGAAGT--
 A C G T A C G T A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A
C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T A C G T A C G T

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GAGGCAGCCA
TGCTGASTCAGC--
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A
A C G T A T C G T G A C G C A T C A T G C G T A T A G C G A C T G A T C C T G A A T C G A G T C A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GAGGCAGCCA-
-----TGCCAA
 A T C G C G T A A C T G A C T G G T A C C G T A C T A G G A T C A G T C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A