Information for 5-GGATCACCAATGG (Motif 4)

A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G
Reverse Opposite:
A T G C A G T C G C T A A C G T A C G T C T A G C T A G A C G T A C T G C T G A A C G T A G T C A G T C
p-value:1e-16
log p-value:-3.738e+01
Information Content per bp:1.830
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.1 +/- 29.4bp
Average Position of motif in Background19.6 +/- 3.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GGATCACCAATGG
-----AACAAAGG
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GGATCACCAATGG
-----RACAAWGG
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GGATCACCAATGG
----GAACAATGG
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G
A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

RHOXF1/MA0719.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GGATCACCAATGG
NGGATTAN------
 A C G T A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGATCACCAATGG
GGACCACCCACG-
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGATCACCAATGG-----
-NNTNNACAATGGGANNN
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGATCACCAATGG-
----GAACAATGGN
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGATCACCAATGG
---VRAACAATGG
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGATCACCAATGG----
-AATGAACAATGGAATT
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G A C G T A C G T A C G T A C G T
A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

NFY(CCAAT)/Promoter/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGATCACCAATGG-
----AGCCAATCGG
 A C T G A C T G C G T A A G C T T G A C G T C A A G T C A G T C C G T A C G T A C A G T A C T G A T C G A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G