Information for 3-GCCATCGBAAGAT (Motif 5)

A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
Reverse Opposite:
T C G A A C G T A T G C G C A T A C G T T A G C G T A C A C T G C G T A C G A T C T A G A C T G A T G C
p-value:1e-9
log p-value:-2.214e+01
Information Content per bp:1.758
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif6.58%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets58.4 +/- 21.4bp
Average Position of motif in Background61.5 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCATCGBAAGAT
TTGCCATGGCAACC-
 A C G T A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCCATCGBAAGAT
TTGCCATGGCAACN-
 A C G T A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T

RFX5/MA0510.2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCCATCGBAAGAT
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCCATCGBAAGAT
GTTGCCATGGCAAC--
 A C G T A C G T A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCATCGBAAGAT
GTTGCCATGGCAACM-
 A C G T A C G T A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T

RFX2/MA0600.2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCATCGBAAGAT
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G A C G T

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCCATCGBAAGAT
CGTTGCCATGGCAACG-
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCCATCGBAAGAT
-SCCTAGCAACAG
 A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCCATCGBAAGAT
CGGTTGCCATGGCAAC--
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCATCGBAAGAT-
TACCATAGCAACGGT
 A C G T A T C G A G T C A G T C G C T A A C G T G T A C A C T G A C T G C G T A C G T A A T C G G T C A A G C T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T