Information for 5-ATCTGAAATCCAT (Motif 11)

C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C T G C G T A A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C G T
p-value:1e-2
log p-value:-6.483e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets20.0 +/- 0.0bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:ATCTGAAATCCAT
---HNRAATCAAT
 C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATCTGAAATCCAT---
ACATCTGGWWTYAATTAR
 A C G T A C G T C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

PB0115.1_Ehf_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ATCTGAAATCCAT
AAGATCGGAANTNNNA
 A C G T A C G T A C G T C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

ONECUT1/MA0679.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ATCTGAAATCCAT---
--AAAAAATCGATAAT
 C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:ATCTGAAATCCAT---
--AAAAAATCGATAAT
 C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATCTGAAATCCAT
-TTTGAAACCG--
 C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ATCTGAAATCCAT
-ACTGAAACCA--
 C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T
A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:ATCTGAAATCCAT---
----GYCATCMATCAT
 C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATCTGAAATCCAT
GGTCTGGCAT----
 A C G T C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:ATCTGAAATCCAT---
--AAAAAATCAATAAT
 C G T A A C G T A G T C A C G T A C T G C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T