Information for 4-CCTGATAGTTGAT (Motif 4)

A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T
Reverse Opposite:
C G T A C G A T G T A C C T G A C G T A G T A C A G C T G T C A A G C T A G T C C G T A A C T G A C T G
p-value:1e-19
log p-value:-4.436e+01
Information Content per bp:1.810
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.1 +/- 20.4bp
Average Position of motif in Background75.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myb/MA0100.2/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCTGATAGTTGAT
--TGGCAGTTGN-
 A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCTGATAGTTGAT--
NNNTGGCAGTTGGTNN
 A C G T A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:3
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CCTGATAGTTGAT--
-----TAATTGATTA
 A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCTGATAGTTGAT
-ATGATKGATGRC
 A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0135.1_Hoxa3_2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCTGATAGTTGAT
CCTTAATNGNTTTT
 A C G T A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T
A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCTGATAGTTGAT
--TGATTGATGA-
 A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCTGATAGTTGAT
--TGGCAGTTGG-
 A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T
A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCTGATAGTTGAT
-NTAATKGTTT--
 A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T
A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCTGATAGTTGAT------
--NNNNNATTGATGNGTGN
 A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Foxq1/MA0040.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCTGATAGTTGAT-
---TATTGTTTATT
 A G T C G T A C C G A T C T A G C T G A A C G T C T G A A C T G C G A T A G C T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T