Information for 16-CGCTGCGGCCGGCCGA (Motif 25)

A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
Reverse Opposite:
C A G T A G T C A C T G A C T G A G T C A G T C A C T G A C T G A T G C A G T C A C T G A G T C C T G A A C T G A G T C A C T G
p-value:1e-8
log p-value:-1.988e+01
Information Content per bp:1.887
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.5 +/- 21.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGCTGCGGCCGGCCGA
GGGGCCGAGGCCTG----
 A C G T A C G T A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGCTGCGGCCGGCCGA
NCGCAGCGGGGGGTC--
 A C G T A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CGCTGCGGCCGGCCGA
NCNCAGCGGGGGGTC--
 A C G T A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CGCTGCGGCCGGCCGA
CACAGCGGGGGGTC--
 A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CGCTGCGGCCGGCCGA
-GCTCCGCCCMCY---
 A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:6
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:CGCTGCGGCCGGCCGA
CTTCGCGGGGGGTC--
 A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
T A G C C A G T G A C T G A T C T C A G G A T C C T A G C A T G A C T G C T A G C A T G C T A G A G C T T G A C A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:CGCTGCGGCCGGCCGA
-GGNGCGNCTGTTNNN
 A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.47
Offset:1
Orientation:forward strand
Alignment:CGCTGCGGCCGGCCGA
-GCCGCGCAGTGCGT-
 A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.47
Offset:0
Orientation:forward strand
Alignment:CGCTGCGGCCGGCCGA
CGCAGCTGCG------
 A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.47
Offset:-1
Orientation:reverse strand
Alignment:-CGCTGCGGCCGGCCGA
DCHCAGCAGGRGGCC--
 A C G T A G T C A C T G A G T C A G C T A C T G A G T C A C T G A T C G A G T C A G T C C T A G A C T G G T A C A G T C A C T G G C T A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T