Information for 8-ATGTGAATGGATK (Motif 3)

T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
Reverse Opposite:
G T C A C G T A A C G T A T G C T A G C C T G A A C G T C G A T T A G C C G T A A G T C C G T A A C G T
p-value:1e-17
log p-value:-4.085e+01
Information Content per bp:1.764
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif93.4
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets59.1 +/- 23.1bp
Average Position of motif in Background48.8 +/- 37.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ATGTGAATGGATK--
ACTATGAATGAATGAT
 A C G T T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATGTGAATGGATK
-TGTGGATTNNN-
 T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATGTGAATGGATK
AGGTGTTAAT-----
 A C G T A C G T T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGTGAATGGATK
TATGCWAATBAV--
 A C G T T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ATGTGAATGGATK
CCTGTCAA------
 A C G T T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATGTGAATGGATK
WATGCAAATGAG--
 A C G T T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ATGTGAATGGATK
--GTTAATGGCC-
 T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATGTGAATGGATK
NTGTTTAYATWW-
 T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATGTGAATGGATK
TATGCAAAT-----
 A C G T T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ATGTGAATGGATK
AAGGTGTKAA------
 A C G T A C G T A C G T T C G A A C G T C T A G A C G T A T C G C G T A C G T A A G C T A T C G A T C G C G T A G A C T A C G T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T