Information for 2-CTCATGAATATTCATG (Motif 2)

A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
Reverse Opposite:
G T A C G T C A A C G T T C A G G T C A C G T A C G A T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A T C A G
p-value:1e-355
log p-value:-8.175e+02
Information Content per bp:1.742
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif14.96%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.7 +/- 14.2bp
Average Position of motif in Background89.3 +/- 0.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:CTCATGAATATTCATG
CTCATGAATATTCAT-
 A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.87
Offset:2
Orientation:forward strand
Alignment:CTCATGAATATTCATG-
--YATGCATATRCATRT
 A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G A C G T
A C G T A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.83
Offset:3
Orientation:forward strand
Alignment:CTCATGAATATTCATG
---ATGMATATDC---
 A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.83
Offset:3
Orientation:forward strand
Alignment:CTCATGAATATTCATG
---ATGAATATTC---
 A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTCATGAATATTCATG
NNTNTCATGAATGT-----
 A C G T A C G T A C G T A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTCATGAATATTCATG
-ATATGCAAATNNN--
 A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CTCATGAATATTCATG
NTTNTATGAATGTGNNC-
 A C G T A C G T A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTCATGAATATTCATG
AAAATATGCATAATAAA-
 A C G T A C G T A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTCATGAATATTCATG
-TTATGCAAAT-----
 A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTCATGAATATTCATG
TTGTATGCAAATTAGA-
 A C G T A G T C G A C T G A T C T G C A A C G T T C A G G T C A C G T A G A C T C G T A C G A T C A G T A G T C C G T A C A G T C A T G
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T