Information for 13-TGATTTATGGCAGGCC (Motif 12)

A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
Reverse Opposite:
A T C G A T C G A G T C A G T C C G A T A C T G A G T C A G T C C G T A C G A T T G C A G T C A C G T A A G C T G T A C C G T A
p-value:1e-11
log p-value:-2.535e+01
Information Content per bp:1.774
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.0 +/- 10.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGGCAGGCC
TGATTTATGGCC----
 A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGGCAGGCC
TGATTTATGGC-----
 A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTATGGCAGGCC
NTGATTTATGGCC----
 A C G T A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGGCAGGCC
TGATTTATGGCC----
 A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGATTTATGGCAGGCC
ATGATKGATGRC-----
 A C G T A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGATTTATGGCAGGCC
TGATTRATGGCY----
 A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGATTTATGGCAGGCC
TGATTGATGA------
 A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGATTTATGGCAGGCC
TTTGATTGATGN------
 A C G T A C G T A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGATTTATGGCAGGCC
TGACANARRCCAGRC-
 A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:10
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------TGATTTATGGCAGGCC
NNNNNATTGATGNGTGN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C G T A C G T A C G T G C T A C G A T C T A G C T A G A G T C G C T A C T A G A C T G A T G C A T G C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T A C G T A C G T A C G T A C G T A C G T