Information for 1-ATGMATWATKCATGWN (Motif 1)

G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
Reverse Opposite:
A T C G G C A T G T A C T G C A A C G T T C A G G T A C G C T A C G A T C G A T C G T A C A G T A C G T A T G C C G T A C A G T
p-value:1e-489
log p-value:-1.127e+03
Information Content per bp:1.725
Number of Target Sequences with motif138.0
Percentage of Target Sequences with motif19.86%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.9 +/- 11.8bp
Average Position of motif in Background38.0 +/- 1.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.99
Offset:0
Orientation:forward strand
Alignment:ATGMATWATKCATGWN
ATGAATWATTCATGA-
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:ATGMATWATKCATGWN
ATGCATWATGCATRW-
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:ATGMATWATKCATGWN
-TGAATTATGCAT---
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:ATGMATWATKCATGWN
ATGAATAATTAATG--
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.87
Offset:0
Orientation:forward strand
Alignment:ATGMATWATKCATGWN
ATGCATAATTAATGAG
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

POU4F2/MA0683.1/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:forward strand
Alignment:ATGMATWATKCATGWN
ATGCATAATTAATGAG
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ATGMATWATKCATGWN--
-TNNATTATGCATANNTT
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C A C G T A C G T
A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:ATGMATWATKCATGWN
---GAATATTCAT---
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATGMATWATKCATGWN
ATGMATATDC------
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:ATGMATWATKCATGWN
----ATGATKGATGRC
 G T C A A C G T T A C G G T C A G C T A A C G T G C T A C G T A C G A T C A T G A G T C C G T A A C G T C A T G C G T A T A G C
A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C