Information for 2-CATGAATWATTCATGR (Motif 2)

G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A
Reverse Opposite:
G A C T G A T C G T C A A C G T T A C G G T C A G C T A A C G T C G T A C G T A C G A T A C G T A G T C C G T A C A G T C T A G
p-value:1e-248
log p-value:-5.730e+02
Information Content per bp:1.747
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif11.61%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 12.9bp
Average Position of motif in Background36.1 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.99
Offset:1
Orientation:forward strand
Alignment:CATGAATWATTCATGR
-ATGAATWATTCATGA
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A
A C G T G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.96
Offset:1
Orientation:forward strand
Alignment:CATGAATWATTCATGR
-ATGCATWATGCATRW
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A
A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:CATGAATWATTCATGR
--TGAATTATGCAT--
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A
A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:4
Score:0.87
Offset:1
Orientation:forward strand
Alignment:CATGAATWATTCATGR
-ATGAATAATTAATG-
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A
A C G T T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:5
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CATGAATWATTCATGR-
-ATGCATAATTAATGAG
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A A C G T
A C G T C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

POU4F2/MA0683.1/Jaspar

Match Rank:6
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CATGAATWATTCATGR-
-ATGCATAATTAATGAG
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A A C G T
A C G T C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CATGAATWATTCATGR
-ATGAATATTC-----
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CATGAATWATTCATGR---
--TNNATTATGCATANNTT
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A A C G T A C G T A C G T
A C G T A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

MF0010.1_Homeobox_class/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CATGAATWATTCATGR
----AATTATT-----
 G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A
A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CATGAATWATTCATGR
NNTNTCATGAATGT-------
 A C G T A C G T A C G T A C G T A C G T G A T C G T C A A C G T A C T G G T C A C G T A A C G T C G A T C G T A C G A T A C G T A G T C C G T A C A G T C T A G C T G A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T