Information for 7-CACKGTGACYAAG (Motif 7)

A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G
Reverse Opposite:
A G T C C G A T A C G T C T G A A T C G A C G T A G T C C G T A A G T C G T C A A C T G A C G T C T A G
p-value:1e-13
log p-value:-3.053e+01
Information Content per bp:1.825
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.9 +/- 26.0bp
Average Position of motif in Background39.9 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CACKGTGACYAAG---
-ACCGTGACTAATTNN
 A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G A C G T A C G T A C G T
A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

Nfe2l2/MA0150.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CACKGTGACYAAG--
CAGCATGACTCAGCA
 A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G A C G T A C G T
G T A C C T G A T A C G T G A C T C G A A C G T A C T G C G T A A T G C G C A T G A T C C T G A T A C G A T G C C G T A

PB0159.1_Rfx4_2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CACKGTGACYAAG---
-NNNGTAACTANGNNA
 A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

PB0158.1_Rfx3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CACKGTGACYAAG-------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CACKGTGACYAAG
NAGGTCACNNTGACC---
 A C G T A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T A C G T A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CACKGTGACYAAG-
---GGTGACTCATG
 A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G A C G T
A C G T A C G T A C G T C T A G T C A G A C G T A C T G C G T A T A G C A C G T G T A C C G T A A C G T T A C G

Pax2/MA0067.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CACKGTGACYAAG
--NCGTGACN---
 A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CACKGTGACYAAG-
--CTGTTGCTAGGS
 A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G A C G T
A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CACKGTGACYAAG
AGGNCANNGTGACCT--
 A C G T A C G T A C G T A C G T A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T A C G T

JUNB/MA0490.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CACKGTGACYAAG
--GGATGACTCAT
 A G T C G T C A A G T C A C G T A C T G A C G T A C T G C G T A A T G C G A C T G T C A C G T A A C T G
A C G T A C G T C A T G C T A G T C G A A C G T A C T G C G T A A T G C A C G T G T A C C G T A A C G T