Information for 5-GGGAGATGATCACCTC (Motif 6)

C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C
Reverse Opposite:
C T A G C G T A A T C G A C T G A C G T A C T G G C T A A C G T A T G C C T G A A C G T A G T C A G C T A T G C T A G C G A T C
p-value:1e-13
log p-value:-3.170e+01
Information Content per bp:1.776
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 31.6bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:1
Score:0.66
Offset:5
Orientation:forward strand
Alignment:GGGAGATGATCACCTC
-----ATTAACACCT-
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C
A C G T A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T

PH0016.1_Cux1_1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGAGATGATCACCTC-
ACCGGTTGATCACCTGA
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C A C G T
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

PB0117.1_Eomes_2/Jaspar

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGGAGATGATCACCTC---
---NNGGCGACACCTCNNN
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C A C G T A C G T A C G T
A C G T A C G T A C G T A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGGAGATGATCACCTC
-NNAGATNVNWATCTN
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C
A C G T C T A G T G A C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T T A C G

FIGLA/MA0820.1/Jaspar

Match Rank:5
Score:0.55
Offset:8
Orientation:forward strand
Alignment:GGGAGATGATCACCTC--
--------ACCACCTGTT
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGGAGATGATCACCTC
ADGGYAGYAGCATCT-
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:GGGAGATGATCACCTC
-------TGACACCT-
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:8
Score:0.54
Offset:8
Orientation:forward strand
Alignment:GGGAGATGATCACCTC--
--------AACACCTGCT
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T

PH0017.1_Cux1_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGGAGATGATCACCTC
TAATGATGATCACTA-
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C
C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.53
Offset:8
Orientation:forward strand
Alignment:GGGAGATGATCACCTC--
--------NNCACCTGNN
 C T A G A C T G A T C G C T G A T C A G C G T A A G C T T A C G C G T A C G A T A G T C C G T A G T A C A T G C A C G T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A