Information for 6-KGGGCAGAMACYM (Motif 17)

C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
Reverse Opposite:
A C G T C T G A A C T G A C G T A C G T A C G T A G T C A C G T A C T G A G T C A G T C A G T C G T A C
p-value:1e-8
log p-value:-2.010e+01
Information Content per bp:1.872
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif7.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.2 +/- 17.5bp
Average Position of motif in Background61.1 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--KGGGCAGAMACYM
TNNGGGCAG------
 A C G T A C G T C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----KGGGCAGAMACYM
NNNNTTGGGCACNNCN--
 A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:KGGGCAGAMACYM
---CCAGACRSVB
 C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--KGGGCAGAMACYM
NGTGGGCAT------
 A C G T A C G T C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-KGGGCAGAMACYM--
AGCGGCACACACGCAA
 A C G T C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:KGGGCAGAMACYM
---CCAGACAG--
 C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:KGGGCAGAMACYM
RGGGCACTAACY-
 C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--KGGGCAGAMACYM
AGGTGHCAGACA---
 A C G T A C G T C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----KGGGCAGAMACYM
WDNCTGGGCA-------
 A C G T A C G T A C G T A C G T C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--KGGGCAGAMACYM
AGGTGNCAGACAG--
 A C G T A C G T C A T G C T A G A C T G A C T G A G T C C G T A A C T G C G T A G T C A C G T A A G T C A G C T T G C A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T