Information for 4-SAATKRGTAWGCT (Motif 6)

A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G A G T C C G A T A C G T G T C A A G T C A G C T G T A C C G T A A C G T A C G T A T C G
p-value:1e-13
log p-value:-3.109e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 22.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:SAATKRGTAWGCT
--ATGMATATDC-
 A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:SAATKRGTAWGCT
--ATGAATATTC-
 A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

PH0089.1_Isx/Jaspar

Match Rank:3
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----SAATKRGTAWGCT
ACNNCTAATTAGNNNN--
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:SAATKRGTAWGCT--
--------AAGCTTG
 A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G

PH0127.1_Nobox/Jaspar

Match Rank:5
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----SAATKRGTAWGCT
CGCGCTAATTAGGTATC-
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C A C G T

LHX2/MA0700.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--SAATKRGTAWGCT
NNTAATTAGN-----
 A C G T A C G T A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
T A C G G A C T G A C T T G C A C G T A A G C T C A G T C T G A T C A G A G C T A C G T A C G T A C G T A C G T A C G T

Nfe2l2/MA0150.2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--SAATKRGTAWGCT
CAGCATGACTCAGCA
 A C G T A C G T A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
G T A C C T G A T A C G T G A C T C G A A C G T A C T G C G T A A T G C G C A T G A T C C T G A T A C G A T G C C G T A

LHX9/MA0701.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-SAATKRGTAWGCT
CCAATTAA------
 A C G T A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
A G T C G A T C G T C A C G T A A C G T A C G T C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PH0106.1_Msx1/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----SAATKRGTAWGCT
NNATTAATTAGTNGNN-
 A C G T A C G T A C G T A C G T A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
C A T G C G T A T G C A G A C T G A C T C G T A C G T A A C G T A C G T C T G A C T A G G A C T C G A T C A T G A G T C T G C A A C G T

EN1/MA0027.2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-SAATKRGTAWGCT
CTAATTAG------
 A C G T A T G C C G T A C G T A A C G T A C T G C T G A C T A G A C G T C G T A C G T A A C T G A G T C A C G T
A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T