Information for 6-GTTTGTGTTGTCA (Motif 9)

A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A
Reverse Opposite:
A C G T A C T G G C T A G T A C C G T A C G T A T G A C C T G A A G T C C G T A C G T A C G T A A T G C
p-value:1e-10
log p-value:-2.494e+01
Information Content per bp:1.802
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif31.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets45.7 +/- 28.0bp
Average Position of motif in Background42.6 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTTGTGTTGTCA
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GTTTGTGTTGTCA--
---GGTGYTGACAGS
 A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.63
Offset:7
Orientation:forward strand
Alignment:GTTTGTGTTGTCA--
-------YTGWCADY
 A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GTTTGTGTTGTCA--
-----NNTTGGCANN
 A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.60
Offset:8
Orientation:forward strand
Alignment:GTTTGTGTTGTCA---
--------TGTCANYT
 A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GTTTGTGTTGTCA---
------VBTGWCAGCB
 A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GTTTGTGTTGTCA-
-------NTGTCAN
 A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

PB0016.1_Foxj1_1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTTTGTGTTGTCA--
NNNNTTTGTTTACNNT
 A C G T A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GTTTGTGTTGTCA-
------CTTGGCAA
 A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GTTTGTGTTGTCA---
-GTNTTGTTGTGANNT
 A T C G G A C T C G A T A C G T C T A G G A C T A C T G A C G T C G A T A C T G C G A T A G T C C G T A A C G T A C G T A C G T
A C G T C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T