Information for 2-SCGCCWTYTTGAS (Motif 3)

A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
Reverse Opposite:
T A G C C G A T A G T C C G T A G T C A C T G A C G T A C G A T A C T G A C T G A G T C A T C G A T G C
p-value:1e-15
log p-value:-3.456e+01
Information Content per bp:1.776
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif61.7
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets47.4 +/- 28.3bp
Average Position of motif in Background53.0 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-SCGCCWTYTTGAS
GCNGCCATCTTG--
 A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-SCGCCWTYTTGAS
GCCGCCATCTTG--
 A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--SCGCCWTYTTGAS
GTCCGCCATTA----
 A C G T A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T

E2F2/MA0864.1/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------SCGCCWTYTTGAS
AAAATGGCGCCATTTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T A C G T A C G T A C G T

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------SCGCCWTYTTGAS
AAAAATGGCGCCATTTTT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----SCGCCWTYTTGAS
ANCGCGCGCCCTTNN---
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:7
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------SCGCCWTYTTGAS
TACGCCCCGCCACTCTG--
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----SCGCCWTYTTGAS
NTCGCGCGCCTTNNN---
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--SCGCCWTYTTGAS
CCTTGCAATTTTTNN
 A C G T A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---SCGCCWTYTTGAS----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A T C G A T G C A C T G A G T C G T A C C G T A A C G T A G C T A C G T A C G T C T A G G C T A A T C G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A