Information for 5-CCGCTACTCA (Motif 8)

A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A
Reverse Opposite:
A G C T T A C G T C G A T A C G A C G T C T G A T A C G G A T C T A C G T A C G
p-value:1e-11
log p-value:-2.617e+01
Information Content per bp:1.652
Number of Target Sequences with motif150.0
Percentage of Target Sequences with motif16.27%
Number of Background Sequences with motif4215.9
Percentage of Background Sequences with motif9.13%
Average Position of motif in Targets50.5 +/- 26.7bp
Average Position of motif in Background50.0 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0154.1_Osr1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCGCTACTCA----
ACATGCTACCTAATAC
 A C G T A C G T A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

PB0155.1_Osr2_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCGCTACTCA----
ACTTGCTACCTACACC
 A C G T A C G T A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CCGCTACTCA-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCGCTACTCA-
SCTGTCAVTCAV
 A C G T A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCGCTACTCA--
-AGCCACTCAAG
 A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCGCTACTCA-
NCTGTCAATCAN
 A C G T A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PH0032.1_Evx2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCGCTACTCA-----
CACCGCTAATTAGCGGT
 A C G T A C G T A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T A C G T A C G T A C G T A C G T
A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCGCTACTCA-
-MRSCACTYAA
 A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCGCTACTCA--
--RSCACTYRAG
 A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A A C G T A C G T
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCGCTACTCA
GSCTGTCACTCA
 A C G T A C G T A T G C A T G C C T A G A T G C G A C T T G C A A T G C A G C T A T G C T C G A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A