Information for 3-KAAKARTATYTAT (Motif 3)

A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T
Reverse Opposite:
C G T A A C G T C G T A C T G A C G T A A C G T C G T A A G C T A C G T G T C A A C G T A C G T G T A C
p-value:1e-13
log p-value:-3.010e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.7 +/- 21.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:KAAKARTATYTAT
---GAATATTCAT
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T
A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:KAAKARTATYTAT
-AAGGATATNTN-
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KAAKARTATYTAT---
-ATGAATATTCATGAG
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T A C G T A C G T A C G T
A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:KAAKARTATYTAT
---GHATATKCAT
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T
A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

PB0063.1_Sox13_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----KAAKARTATYTAT
TTAAGAACAATAAATT-
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T A C G T

PB0163.1_Six6_2/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:KAAKARTATYTAT-----
-ANNNGGATATATCCNNN
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:KAAKARTATYTAT-
---TATTGTTTATT
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T A C G T
A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

Arid5a/MA0602.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:KAAKARTATYTAT---
--CTAATATTGCTAAA
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:KAAKARTATYTAT---
--CTAATATTGCTAAA
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0198.1_Zfp128_2/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:KAAKARTATYTAT---
--TGTATATATATACC
 A C T G C G T A C G T A A C G T G T C A C T G A C G A T C G T A A C G T A G C T A C G T C G T A C G A T A C G T A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C