Information for 1-CTCAACCAAT (Motif 9)

G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C T G T A C G A C G T A G C T A C T G C G T A A C T G
p-value:1e-11
log p-value:-2.695e+01
Information Content per bp:1.910
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif14.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.1 +/- 18.8bp
Average Position of motif in Background59.4 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CTCAACCAAT---
AAATGGACCAATCAG
 A C G T A C G T G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTCAACCAAT
CCATCAATCAAA
 A C G T A C G T G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTCAACCAAT--
ACTAGCCAATCA
 G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTCAACCAAT
HNRAATCAAT
 G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CTCAACCAAT---
---AGCCAATCGG
 G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYA/MA0060.2/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTCAACCAAT---------
-TGGACCAATCAGCACTCT
 G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTCAACCAAT----
CGACCCAATCAACGGTG
 A C G T A C G T A C G T G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTCAACCAAT
-CCAATCAA-
 G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTCAACCAAT------
AACAACCAATTAATTC
 G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTCAACCAAT
---NAACAAT
 G T A C A C G T A G T C T C G A C G T A A G T C G T A C C G T A C G T A A C G T
A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T