Information for 10-GAGCCAGSCAGAA (Motif 21)

A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A
Reverse Opposite:
A C G T A G C T A G T C C G A T A T C G A T G C A T G C G A C T C T A G A C T G G A T C A G C T A G T C
p-value:1e-7
log p-value:-1.720e+01
Information Content per bp:1.819
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif32.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets50.1 +/- 24.6bp
Average Position of motif in Background51.5 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)3.3
Multiplicity (# of sites on avg that occur together)1.57
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GAGCCAGSCAGAA-
----ATGCCAGACN
 A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A A C G T
A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

HSF4/MA0771.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGCCAGSCAGAA
GAANNTTCTAGAA
 A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A
T C A G G C T A G C T A A G T C T C A G C G A T C G A T T A G C A G C T T C G A A T C G G T C A G C T A

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCAGSCAGAA----
TGGACCAATCAGCACTCT
 A C G T A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

HSF2/MA0770.1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAGCCAGSCAGAA
GAANGTTCTAGAA
 A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A
T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GAGCCAGSCAGAA
---CTTGGCAA--
 A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGCCAGSCAGAA
TAGAANVTTCTAGAA
 A C G T A C G T A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A
G A C T C T G A T C A G T G C A C G T A A T G C T A C G G A C T C A G T A G T C G A C T C T G A C A T G T C G A C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGCCAGSCAGAA
AGGTGNCAGACAG--
 A C G T A C G T A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

HSF1/MA0486.2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GAGCCAGSCAGAA
GAACGTTCTAGAA
 A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A
C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:GAGCCAGSCAGAA----
-------CCAGACRSVB
 A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GAGCCAGSCAGAA--
CAAATCCAGACATCACA
 A C G T A C G T A C T G C T G A C T A G T A G C A G T C C G T A A T C G A T C G A T G C C G T A A C T G T C G A G T C A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A