Information for 5-CTCGGCTTTCCCC (Motif 8)

A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C
Reverse Opposite:
A C T G C T A G T C A G T C A G C T G A C T G A G T C A C A T G A G T C G T A C A T C G G T C A C T A G
p-value:1e-12
log p-value:-2.896e+01
Information Content per bp:1.775
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif67.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets47.1 +/- 24.2bp
Average Position of motif in Background50.8 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MZF1/MA0056.1/Jaspar

Match Rank:1
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:CTCGGCTTTCCCC-
--------TCCCCA
 A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTCGGCTTTCCCC-
--GGGGATTCCCCC
 A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CTCGGCTTTCCCC
GKMTCADRTTWC---
 A C G T A C G T A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CTCGGCTTTCCCC
TGCTGTGATTT----
 A C G T A C G T A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTCGGCTTTCCCC
-GGGGATTTCC--
 A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTCGGCTTTCCCC--
-TGACCTTTGCCCTA
 A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTCGGCTTTCCCC---
-TGACCTTTGCCCTAN
 A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C A C G T A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTCGGCTTTCCCC--
-TGACCTTTGCCCCA
 A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C A C G T A C G T
A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTCGGCTTTCCCC
GKVTCADRTTWC---
 A C G T A C G T A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTCGGCTTTCCCC--
TNNNATGATTTCNNCNN
 A C G T A C G T A G T C A C G T A T G C C A T G A C T G G T A C A C G T A G C T A G C T A G T C A G T C A G T C G T A C A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T