Information for 6-GAGGTTRATC (Motif 27)

C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C
Reverse Opposite:
C T A G C T G A C G A T A G C T G T C A T G C A A T G C A G T C C G A T A G T C
p-value:1e-8
log p-value:-1.848e+01
Information Content per bp:1.741
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif120.8
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets46.7 +/- 25.7bp
Average Position of motif in Background52.3 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0015.1_Crx/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GAGGTTRATC-------
-AGGCTAATCCCCAANG
 C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

PH0016.1_Cux1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGGTTRATC------
ACCGGTTGATCACCTGA
 A C G T C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GAGGTTRATC-
---GCTAATCC
 C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAGGTTRATC--
----TTAATCCT
 C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GAGGTTRATC---
---NYTAATCCYB
 C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PH0035.1_Gsc/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAGGTTRATC------
AATCGTTAATCCCTTTA
 A C G T C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAGGTTRATC--
----TTAATCCC
 C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GAGGTTRATC--
----TTAATCCG
 C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

PB0161.1_Rxra_2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTTRATC-
TCGCGAAGGTTGTACT
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAGGTTRATC--
----YTAATCCY
 C T A G C G T A A C T G A T C G A C G T C A G T C T G A C G T A G A C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C