Information for 4-TGGTCACGGT (Motif 22)

C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T
Reverse Opposite:
G C T A T G A C A T G C T A C G C G A T A T C G T G C A A T G C A T G C C G T A
p-value:1e-9
log p-value:-2.133e+01
Information Content per bp:1.687
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.68%
Number of Background Sequences with motif425.1
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets48.8 +/- 22.2bp
Average Position of motif in Background49.5 +/- 35.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGGTCACGGT
-AGTCACGC-
 C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----TGGTCACGGT
NNAATTAGTCACGGT
 A C G T A C G T A C G T A C G T A C G T C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TGGTCACGGT------
--GTCACGCTCNCTGA
 C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGGTCACGGT
AGGTCA----
 C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGGTCACGGT--
AGGTCAAGGTCA
 C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGGTCACGGT--
AGGTCAAGGTCA
 C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGGTCACGGT
AGRGGTCA----
 A C G T A C G T C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGGTCACGGT
NGTGGGCAT---
 A C G T A C G T C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGGTCACGGT------
-GGTCANNGTGACCTN
 C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGTCACGGT
AAGGTCAC---
 A C G T C G A T A T C G A T C G A C G T T A G C G C T A A T G C T A C G A C T G C G A T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T