Information for 13-AARGCAATGGGAG (Motif 19)

C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
Reverse Opposite:
A G T C A C G T A T G C G T A C A G T C C G T A G C A T C G A T A C T G G T A C A G T C A C G T A G C T
p-value:1e-9
log p-value:-2.237e+01
Information Content per bp:1.795
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif20.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets65.9 +/- 18.6bp
Average Position of motif in Background47.8 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AARGCAATGGGAG
AAAACAATGG---
 C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AARGCAATGGGAG
VRAACAATGG---
 C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AARGCAATGGGAG
AAAAGTCAA------
 A C G T A C G T C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AARGCAATGGGAG
-AGCCAATCGG--
 C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AARGCAATGGGAG---
CAATCACTGGCAGAAT
 C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AARGCAATGGGAG
HNRAATCAAT-----
 A C G T A C G T C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AARGCAATGGGAG
-RAACAATGGN--
 C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AARGCAATGGGAG
CAAATCACTG----
 A C G T C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AARGCAATGGGAG
AAAACAAAGG---
 C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--AARGCAATGGGAG--
NNTNNACAATGGGANNN
 A C G T A C G T C T G A C G T A C T A G A C T G A G T C C G T A C G T A C G A T A C T G C A T G A T C G C G T A A C T G A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A