Information for 3-CKGCCCAGKAGGAASA (Motif 4)

A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
Reverse Opposite:
C A G T A T G C A G C T A C G T A T G C G T A C C G A T G T A C A T G C C G A T A C T G A C T G A C T G A G T C T G C A A T C G
p-value:1e-11
log p-value:-2.639e+01
Information Content per bp:1.771
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.5 +/- 26.7bp
Average Position of motif in Background80.9 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CKGCCCAGKAGGAASA
-TGCCCAGNHW-----
 A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CKGCCCAGKAGGAASA
CCACACAGCAGGAGA-
 A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CKGCCCAGKAGGAASA
CCACACAGCAGGAGA-
 A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CKGCCCAGKAGGAASA
---CACAGCAGGGGG-
 A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CKGCCCAGKAGGAASA
GAGCACAGCAGGACA-
 A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CKGCCCAGKAGGAASA-
--DCHCAGCAGGRGGCC
 A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CKGCCCAGKAGGAASA
ATGCCCACC-------
 A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CKGCCCAGKAGGAASA
GGGTGTGCCCAAAAGG----
 A C G T A C G T A C G T A C G T A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CKGCCCAGKAGGAASA
--DCTCAGCAGG----
 A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CKGCCCAGKAGGAASA
ATTTCCCAGVAKSCY--
 A C G T A T G C A C G T T C A G A G T C G T A C A G T C G C T A A T C G A C T G C G T A A C T G T A C G G T C A C T G A T A C G G T C A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T