Information for 19-TTTATACGCGGTC (Motif 33)

A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A G T C A C T G A G T C A C T G A C G T C G T A A C G T C G T A C G T A C G T A
p-value:1e-7
log p-value:-1.754e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.2 +/- 15.8bp
Average Position of motif in Background56.7 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATACGCGGTC
NNNNNNCTTTTATAN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------TTTATACGCGGTC
NNNNNNCTTTTATAN------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTTATACGCGGTC
TTTTATKRGG----
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TTTATACGCGGTC-
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TTTATACGCGGTC
NTTTTACGAGN--
 A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TTTATACGCGGTC
TTTTTATTGG-----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TTTATACGCGGTC
NTTTTATTGG-----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TTTATACGCGGTC
TTTTATTRGN----
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TTTATACGCGGTC
CCTTTTATAGNC----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TTTATACGCGGTC
NTTTTATTGG-----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A A G T C A C T G A G T C A C T G A C T G A C G T A G T C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T