Information for 9-CCCAAAATACACADGT (Motif 10)

A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
Reverse Opposite:
G C T A A T G C G A C T A C G T A T C G A C G T A C T G C G A T C G T A A G C T A C G T A C G T A C G T A C T G A C T G A T C G
p-value:1e-12
log p-value:-2.812e+01
Information Content per bp:1.790
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.8 +/- 23.2bp
Average Position of motif in Background56.2 +/- 11.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCCAAAATACACADGT
TGCCAAAATAAACANN-
 A C G T A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CCCAAAATACACADGT
-NCTAAGTAAACA---
 A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCCAAAATACACADGT
--TCCAATCCACA---
 A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCCAAAATACACADGT-
--CAAAGTAAACANNNN
 A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

ZNF143/MA0088.2/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCAAAATACACADGT
TACCCACAATGCATTG--
 A C G T A C G T A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCCAAAATACACADGT
---AAAGTAAACA---
 A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCCAAAATACACADGT
---WWTRTAAACAVG-
 A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
A C G T A C G T A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCCAAAATACACADGT
---AAAGTAAACA---
 A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCCAAAATACACADGT
----AAATAAACA---
 A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCCAAAATACACADGT
-NCWRWGTAAACANSV
 A T G C T G A C A G T C C G T A G T C A C G T A C T G A A C G T C G T A G T A C C G T A A T G C C G T A C G T A A T C G C G A T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G