Information for 13-CCGGTCACGC (Motif 26)

A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C
Reverse Opposite:
A C T G A G T C A T C G A C G T A C T G G T C A A G T C A G T C A C T G A C T G
p-value:1e-7
log p-value:-1.750e+01
Information Content per bp:1.945
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.0 +/- 34.1bp
Average Position of motif in Background60.8 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CCGGTCACGC-
-----CACGCA
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCGGTCACGC
--AGTCACGC
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CCGGTCACGC---
-CNGTCACGCCAC
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T A C G T A C G T
A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCGGTCACGC-
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

E-box(bHLH)/Promoter/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCGGTCACGC--
CCGGTCACGTGA
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T A C G T
A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCGGTCACGC-----
NNGGCCACGCCTTTN
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

EGR2/MA0472.2/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCGGTCACGC-
ACGCCCACGCA
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T
G T C A A G T C C T A G A G T C T G A C A G T C T G C A A G T C C A T G A G T C C T G A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CCGGTCACGC-------
---GTCACGCTCNCTGA
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PAX1/MA0779.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCGGTCACGC---------
--CGTCACGCATGACTGCA
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

Mitf/MA0620.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCGGTCACGC--
--GGTCACGTGG
 A G T C A G T C A C T G A C T G A C G T A G T C C G T A A T G C A C T G A G T C A C G T A C G T
A C G T A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G