Information for 5-GTCCAAAGTCCAA (Motif 3)

A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A
Reverse Opposite:
A G C T A C G T C T A G A T C G C G T A G T A C A C G T G A C T A C G T C A T G C A T G G T C A T G A C
p-value:1e-21
log p-value:-5.063e+01
Information Content per bp:1.771
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif18.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.7 +/- 28.6bp
Average Position of motif in Background38.3 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GTCCAAAGTCCAA---
GGCAAAAGTCCAATAA
 A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----GTCCAAAGTCCAA
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---GTCCAAAGTCCAA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GTCCAAAGTCCAA-
GGGGTCAAAGTCCAAT
 A C G T A C G T A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GTCCAAAGTCCAA
---CAAAGGTCAG
 A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Rarg/MA0859.1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GTCCAAAGTCCAA
AAGGTCAAAAGGTCAA
 A C G T A C G T A C G T A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

Nr2e1/MA0676.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTCCAAAGTCCAA
---AAAAGTCAA-
 A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A
A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

Rarb/MA0857.1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTCCAAAGTCCAA
AAAGGTCAAAAGGTCA-
 A C G T A C G T A C G T A C G T A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GTCCAAAGTCCAA-
----GCATTCCAGN
 A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A A C G T
A C G T A C G T A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTCCAAAGTCCAA
TAGGGCAAAGGTCA-
 A C G T A C G T A C T G C A G T G A T C G A T C C G T A C T G A T C G A A C T G A C G T A T G C A G T C C G T A T C G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T