Information for 11-AYCCAACTAG (Motif 27)

G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G
Reverse Opposite:
G T A C A G C T C T G A A C T G A C G T C A G T C A T G T A C G T C A G C G A T
p-value:1e-8
log p-value:-1.981e+01
Information Content per bp:1.678
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif186.9
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets54.8 +/- 25.8bp
Average Position of motif in Background50.1 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0089.1_Isx/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AYCCAACTAG----
ACNNCTAATTAGNNNN
 A C G T A C G T G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AYCCAACTAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

MSX2/MA0708.1/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AYCCAACTAG
--CCAATTAA
 G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

HMBOX1/MA0895.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AYCCAACTAG-
-GTTAACTAGN
 G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

GBX1/MA0889.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AYCCAACTAG-
-ACTAATTAGC
 G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G A C G T
A C G T T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C

Msx3/MA0709.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AYCCAACTAG
--CCAATTAA
 G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G
A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

MSX1/MA0666.1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AYCCAACTAG
--CCAATTAG
 G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G
A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

LBX2/MA0699.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AYCCAACTAG-
-GCCAATTAGC
 G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G A C G T
A C G T T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AYCCAACTAG---
AACAACCAATTAATTC
 A C G T A C G T A C G T G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G A C G T A C G T A C G T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PH0094.1_Lhx4/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AYCCAACTAG----
CAAAGCTAATTAGNTTN
 A C G T A C G T A C G T G C T A A G T C A T G C G T A C G T C A T G C A T G A C G A C T T C G A A C T G A C G T A C G T A C G T A C G T
G A T C T G C A G C T A T G C A T A C G A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A G C T G C A T C A G T G T C A