Information for 4-GCAGCAGCAC (Motif 10)

C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T T C A G A T G C A C G T A C T G G T A C C A G T A C T G A G T C
p-value:1e-7
log p-value:-1.810e+01
Information Content per bp:1.890
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif198.5
Percentage of Background Sequences with motif0.76%
Average Position of motif in Targets48.1 +/- 24.9bp
Average Position of motif in Background48.9 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCAGCAGCAC--
ADGGYAGYAGCATCT
 A C G T A C G T A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGCAC-
AGCAGCTGCTNN
 A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C A C G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGCAC
ANCAGCTG---
 A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAGCAC
CGCAGCTGCG-
 A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAGCAGCAC
NCAGCTGCTG
 C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGCAC-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGCAC--
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

Ascl2/MA0816.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAGCAC
AGCAGCTGCT-
 A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAGCAGCAC-
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAGCAGCAC
NNACAGCTGC--
 A C G T A C G T C T A G A G T C G T C A A C T G A G T C C G T A A T C G A G T C C G T A A G T C
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T