Information for 2-AGACACAATS (Motif 9)

C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G
Reverse Opposite:
A T G C C T G A C A G T A C G T T A C G A C G T A C T G C G A T A T G C A C G T
p-value:1e-10
log p-value:-2.444e+01
Information Content per bp:1.865
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif4.47%
Number of Background Sequences with motif415.6
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets46.2 +/- 22.9bp
Average Position of motif in Background49.2 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0168.1_Sox14_2/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGACACAATS----
CTCACACAATGGCGC
 A C G T C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:AGACACAATS--
---GACAATGNN
 C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGACACAATS-
-RNAACAATGG
 C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGACACAATS-
-VRAACAATGG
 C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G A C G T
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGACACAATS--
--RAACAATGGN
 C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G A C G T A C G T
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGACACAATS-
-VRRACAAWGG
 C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0183.1_Sry_2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGACACAATS----
TCACGGAACAATAGGTG
 A C G T A C G T A C G T C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AGACACAATS
----ACAAAG
 C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGACACAATS
GTAAACAAT-
 C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGACACAATS-
-AAAACAATGG
 C G T A A T C G C G T A A G T C C G T A A T G C C G T A G C T A A G C T A T C G A C G T
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G