Information for 3-AGAAGATTCATABTTC (Motif 3)

C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C
Reverse Opposite:
A C T G C G T A C G T A T C G A C G A T C G T A C G A T A T C G G T C A C G T A C A G T G T A C A C G T A C G T A G T C C G A T
p-value:1e-12
log p-value:-2.943e+01
Information Content per bp:1.786
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.3 +/- 13.9bp
Average Position of motif in Background59.2 +/- 42.0bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGAAGATTCATABTTC
-GAATATTCAT-----
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGAAGATTCATABTTC
ATGAATATTCATGAG--
 A C G T C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGAAGATTCATABTTC
-GHATATKCAT-----
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGAAGATTCATABTTC-
-----ATGCATAATTCA
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGAAGATTCATABTTC---
---ANNTCCATTGTTCNNN
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGAAGATTCATABTTC
NGAAGC----------
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.52
Offset:7
Orientation:forward strand
Alignment:AGAAGATTCATABTTC-
-------YCTTTGTTCC
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGAAGATTCATABTTC------
TNNANNTCTATTGTTNTNNANN
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGAAGATTCATABTTC----
---NNNTCCTTTGTTCTNNN
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGAAGATTCATABTTC----
---GTATCTATTGTTCTTTA
 C G T A A C T G G T C A C G T A A C T G G T C A C G A T A C G T A T G C C G T A A C G T C G T A A G C T C G A T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A