Information for 8-GCCCCATGCCTGCTGT (Motif 12)

A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T
Reverse Opposite:
C G T A A T G C G T C A A C T G A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C T G A C T G A C T G A C T G A G T C
p-value:1e-9
log p-value:-2.117e+01
Information Content per bp:1.928
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 29.0bp
Average Position of motif in Background59.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GCCCCATGCCTGCTGT----
-----TNTCCTGCTGTGNNG
 A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCCCCATGCCTGCTGT----
-----NNTCCTGCTGTGNNN
 A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCCCCATGCCTGCTGT-
-----CCCCCTGCTGTG
 A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GCCCCATGCCTGCTGT--
--------CCTGCTGAGH
 A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

TFAP2A/MA0003.3/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCCCCATGCCTGCTGT
CGCCTCAGGCA------
 A C G T A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCCCCATGCCTGCTGT----
-----TCNCCTGCTGNGNNN
 A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCCCCATGCCTGCTGT
-NNACTTGCCTT----
 A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCCCCATGCCTGCTGT
AGCCTCAGGCA------
 A C G T A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCCCCATGCCTGCTGT
GGGGCCGAGGCCTG----
 A C G T A C G T A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCCCCATGCCTGCTGT
AGCCTCAGGCA------
 A C G T A C T G A G T C A G T C A G T C A G T C G T C A A C G T A C T G A G T C G T A C A C G T A C T G G T A C A C G T A T C G C G A T
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T