Information for 3-AGGCTGTTAATATTAG (Motif 3)

C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
Reverse Opposite:
G T A C C G A T C T G A G C T A A G C T C G T A A C G T G C A T C G T A G T C A G T A C C G T A A C T G A G T C G T A C C G A T
p-value:1e-12
log p-value:-2.789e+01
Information Content per bp:1.690
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.6 +/- 20.4bp
Average Position of motif in Background44.2 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGCTGTTAATATTAG
--NNTNNCAATATTAG
 C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGCTGTTAATATTAG
--NNTNNCAATATTAG
 C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGCTGTTAATATTAG
AAGACGCTGTAAAGCGA--
 A C G T A C G T A C G T C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T A C G T

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGGCTGTTAATATTAG
AAGACGCTGTAAAGCGA--
 A C G T A C G T A C G T C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGGCTGTTAATATTAG
AGGACGCTGTAAAGGGA--
 A C G T A C G T A C G T C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGGCTGTTAATATTAG
AAGGTGTKAA------
 C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTGTTAATATTAG
NNNCAGCTGTCAATATN--
 A C G T A C G T A C G T C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGGCTGTTAATATTAG
-AGGTGTTAAT-----
 C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T A C G T A C G T A C G T A C G T

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGGCTGTTAATATTAG
-NNNTGTTGTTGTTNG
 C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
A C G T C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGGCTGTTAATATTAG
---NTGTTTAYATWW-
 C G T A C A T G A C T G A G T C C G A T C A T G C A G T C G A T C G T A G T C A C G A T T C G A C A G T A G C T C G T A A C T G
A C G T A C G T A C G T C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T