Information for 13-TCGCAAAGCG (Motif 20)

A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G
Reverse Opposite:
A G T C A C T G A G T C A C G T A C G T A C G T T C A G A G T C T A C G C T G A
p-value:1e-8
log p-value:-1.943e+01
Information Content per bp:1.836
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif64.8
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets40.0 +/- 28.0bp
Average Position of motif in Background53.2 +/- 37.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD12/MA0873.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCGCAAAGCG
AGTCGTAAAAA-
 A C G T A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TCGCAAAGCG-
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCGCAAAGCG
GGTCGTAAAAA-
 A C G T A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TCGCAAAGCG-
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCGCAAAGCG-
GCCGCGCAGTGCGT
 A C G T A C G T A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCGCAAAGCG
GGTCGTAAAAT-
 A C G T A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCGCAAAGCG
GTCGTAAAAA-
 A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TCGCAAAGCG-
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TCGCAAAGCG
GCTCGTAAAAA-
 A C G T A C G T A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TCGCAAAGCG
-----CAGCC
 A G C T A T G C A C T G A G T C G T C A T G C A G T C A A C T G A G T C T C A G
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C