Information for 16-CATCTCCATGCAC (Motif 24)

A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
Reverse Opposite:
C T A G C G A T A C T G A G T C C G T A A C G T A C T G A C T G C G T A A T C G C G T A A C G T A C T G
p-value:1e-4
log p-value:-1.008e+01
Information Content per bp:1.930
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.5 +/- 17.2bp
Average Position of motif in Background61.3 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CATCTCCATGCAC
CTCATTTGCATW---
 A C G T A C G T A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CATCTCCATGCAC
BTVATTWGCATA---
 A C G T A C G T A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CATCTCCATGCAC
TTCATTTGCATAT--
 A C G T A C G T A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATCTCCATGCAC
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CATCTCCATGCAC
TNTAATTTGCATACNA
 A C G T A C G T A C G T A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CATCTCCATGCAC
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CATCTCCATGCAC
GHATATKCAT----
 A C G T A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CATCTCCATGCAC----
AAAATACATGTAAAAAT
 A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CATCTCCATGCAC---
ANTNTTACATGTATNTA
 A C G T A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C A C G T A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CATCTCCATGCAC
-ATTTGCATA---
 A G T C C G T A A C G T A T G C A C G T G T A C A G T C C G T A A C G T A C T G A G T C C G T A A G T C
A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T A C G T A C G T