Information for 5-AGTGGAGGCAGCCAGC (Motif 6)

C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
Reverse Opposite:
A C T G G T A C A C G T A C T G A C T G A G T C A C G T A C T G A G T C A G T C A C G T A G T C A G T C G T C A A T G C G A C T
p-value:1e-11
log p-value:-2.570e+01
Information Content per bp:1.863
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.3 +/- 21.2bp
Average Position of motif in Background40.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGTGGAGGCAGCCAGC
--AGGTGNCAGACAG-
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTGGAGGCAGCCAGC
-TGGCAGNCTGCCAG-
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGTGGAGGCAGCCAGC
AAGGKGRCGCAGGCA--
 A C G T C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGTGGAGGCAGCCAGC
--AGGTGHCAGACA--
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:AGTGGAGGCAGCCAGC
---TGAGTCAGCA---
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
A C G T A C G T A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGTGGAGGCAGCCAGC--
-GGGRAARRGRMCAGMTG
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C A C G T A C G T
A C G T C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.52
Offset:8
Orientation:forward strand
Alignment:AGTGGAGGCAGCCAGC
--------CAGCC---
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AGTGGAGGCAGCCAGC
-------BCAGACWA-
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AGTGGAGGCAGCCAGC
-GTGGAT---------
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C
A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:AGTGGAGGCAGCCAGC------
-------SCAGYCADGCATGAC
 C G T A A T C G C A G T A C T G A C T G C G T A A C T G A C T G A G T C C G T A A C T G A G T C G T A C C G T A A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C