Information for 4-RGASCTCACKSAGCCT (Motif 4)

C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T
Reverse Opposite:
C T G A C T A G A C T G A T G C A C G T A T C G T G C A T A C G A C G T A C T G C T G A A C T G A T G C G A C T A G T C A G C T
p-value:1e-11
log p-value:-2.578e+01
Information Content per bp:1.742
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.8 +/- 12.5bp
Average Position of motif in Background45.2 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR2/MA0258.2/Jaspar

Match Rank:1
Score:0.54
Offset:2
Orientation:forward strand
Alignment:RGASCTCACKSAGCCT-
--AGGTCACCCTGACCT
 C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T A C G T
A C G T A C G T C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:2
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:RGASCTCACKSAGCCT
--TGCTGASTCAGC--
 C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T
A C G T A C G T A C G T A T C G T G A C G C A T C A T G C G T A T A G C G A C T G A T C C T G A A T C G A G T C A C G T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:3
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-RGASCTCACKSAGCCT
ATGACGTCAYYN-----
 A C G T C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T
T C G A G C A T A C T G C T G A A G T C T C A G G C A T T G A C C G T A A G C T A G T C T A C G A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.52
Offset:10
Orientation:forward strand
Alignment:RGASCTCACKSAGCCT
----------CAGCC-
 C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:RGASCTCACKSAGCCT
AGRGGTCA--------
 C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:6
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---RGASCTCACKSAGCCT-
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-RGASCTCACKSAGCCT
RTGACGTCAYCN-----
 A C G T C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T
T C G A G A C T A C T G C G T A A G T C T C A G G A C T T G A C C T G A A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:RGASCTCACKSAGCCT----
-----SCAGYCADGCATGAC
 C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-RGASCTCACKSAGCCT
ATGACGTCATCN-----
 A C G T C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T
T C G A G C A T A C T G C T G A A G T C T C A G G A C T G T A C C G T A A G C T A G T C G A T C A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:RGASCTCACKSAGCCT
TGACANARRCCAGRC-
 C T G A A C T G C T G A A T C G G T A C G A C T A G T C C G T A A T G C A C G T T A G C C G T A A T C G T A G C A G T C A G C T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T