Information for 2-GCYAGACTGGCTG (Motif 13)

A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
Reverse Opposite:
G T A C C G T A C T A G A G T C A G T C C T G A A C T G A G C T A G T C A G C T C T A G A C T G A G T C
p-value:1e-10
log p-value:-2.376e+01
Information Content per bp:1.830
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets39.1 +/- 21.2bp
Average Position of motif in Background48.0 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCYAGACTGGCTG
-CCAGACAG----
 A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCYAGACTGGCTG
-CCAGACRSVB--
 A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCYAGACTGGCTG
ATGCCAGACN-----
 A C G T A C G T A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:GCYAGACTGGCTG
--------NGCTN
 A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCYAGACTGGCTG
AGGTGHCAGACA-----
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:6
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------GCYAGACTGGCTG
VAAACYKGTHWAACMRGTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
T C G A C T G A C T G A C G T A T A G C G A C T C A T G T C A G G C A T G C A T C G T A C T G A C T G A A G T C G T A C C T A G A T C G G A C T G A C T A G C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCYAGACTGGCTG-
GTCATGCHTGRCTGS
 A C G T A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCYAGACTGGCTG
-BCAGACWA----
 A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCYAGACTGGCTG--
---TGATTGGCTANN
 A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCYAGACTGGCTG
AGGTGNCAGACAG----
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A C T A G C T G A G T A C A G C T C T A G A C T G A G T C A C G T A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T