Information for 2-AATTCRGCDCCTTGGC (Motif 5)

C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C
Reverse Opposite:
A C T G A T G C A G T C C T G A G T C A A C T G A C T G G A C T T A C G A G T C G A C T C T A G T G C A T G C A A G C T G C A T
p-value:1e-11
log p-value:-2.701e+01
Information Content per bp:1.703
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.5 +/- 23.6bp
Average Position of motif in Background48.8 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.61
Offset:10
Orientation:reverse strand
Alignment:AATTCRGCDCCTTGGC---
----------NTTGGCANN
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.60
Offset:11
Orientation:forward strand
Alignment:AATTCRGCDCCTTGGC-
-----------TTGGCA
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

REST/MA0138.2/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AATTCRGCDCCTTGGC-------
--TTCAGCACCATGGACAGCGCC
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AATTCRGCDCCTTGGC-------
---TCAGCACCATGGACAGCTCC
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:AATTCRGCDCCTTGGC---
---------NNTTGGCANN
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AATTCRGCDCCTTGGC--
----NTGCCCTTGGGCGN
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AATTCRGCDCCTTGGC-
-------CCGATTGGCT
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AATTCRGCDCCTTGGC
------TGACCTTGAN
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:AATTCRGCDCCTTGGC--
----------CTTGGCAA
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AATTCRGCDCCTTGGC
------TGACCTTGAV
 C G T A T C G A A C G T A C G T A G T C C T G A A C T G A T G C C G T A A G T C G T A C A C G T A G C T A C T G A T C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A