Information for 5-CCTGCAGTTACCT (Motif 6)

G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
Reverse Opposite:
T G C A T A C G T C A G C G A T G T C A C G T A A T G C G A C T T C A G T A G C C G T A C T A G C T A G
p-value:1e-16
log p-value:-3.838e+01
Information Content per bp:1.746
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.13%
Number of Background Sequences with motif54.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets41.3 +/- 24.1bp
Average Position of motif in Background50.8 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCTGCAGTTACCT---
TGACCTAAAGTAACCTCTG
 A C G T A C G T A C G T G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCAGTTACCT
TGACCTNTAGTAACCC
 A C G T A C G T A C G T G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTGCAGTTACCT
CCTGCTGAGH---
 G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCTGCAGTTACCT
-CAGCTGTTTCCT
 G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
A C G T G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCAGTTACCT
CCCCCTGCTGTG----
 A C G T A C G T A C G T G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCAGTTACCT
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCTGCAGTTACCT-
---NNACTTACCTN
 G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCTGCAGTTACCT
-BRRCVGTTDN--
 G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
A C G T A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T

GFY(?)/Promoter/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTGCAGTTACCT
ACTACAATTCCC-
 G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T

RUNX2/MA0511.2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCTGCAGTTACCT
-TTGCGGTTT---
 G A T C A G T C G A C T A C T G A G T C C T G A A T C G C G A T A C G T G C T A A G T C A G T C A C G T
A C G T A G C T A C G T A C T G G A T C A C T G A C T G A C G T G A C T C G A T A C G T A C G T A C G T