Information for 21-TCSSAGGGTGSCA (Motif 27)

A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A
Reverse Opposite:
A C G T A C T G T A C G A G T C C G T A A G T C A G T C A G T C A C G T A T G C T A C G A C T G C G T A
p-value:1e-7
log p-value:-1.813e+01
Information Content per bp:1.897
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.5 +/- 18.2bp
Average Position of motif in Background50.4 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TCSSAGGGTGSCA----
-NGTAGGTTGGCATNNN
 A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PH0164.1_Six4/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCSSAGGGTGSCA-----
-TNNNNGGTGTCATNTNT
 A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:TCSSAGGGTGSCA-
-----GGTTGGCAT
 A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Spz1/MA0111.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TCSSAGGGTGSCA--
----AGGGTAACAGC
 A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TCSSAGGGTGSCA
-----AGGTGTCA
 A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

Znf423/MA0116.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TCSSAGGGTGSCA
GGCACCCAGGGGTGC-
 A C G T A C G T A C G T A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A
T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCSSAGGGTGSCA
TTGGCATGGTGCCA
 A C G T A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:7
Orientation:forward strand
Alignment:TCSSAGGGTGSCA--
-------TTGCCAAG
 A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TCSSAGGGTGSCA--
------CGTGCCAAG
 A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:forward strand
Alignment:TCSSAGGGTGSCA---
------GGTGCCAAGT
 A C G T A G T C A T G C A T C G C G T A A C T G A C T G A C T G A C G T A C T G A T G C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T