Information for 15-GGCCAGTGACCTA (Motif 20)

A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A
Reverse Opposite:
A G C T C G T A A C T G A C T G A C G T A G T C C G T A A G T C A C G T A C T G A C T G G T A C A T G C
p-value:1e-10
log p-value:-2.502e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 16.9bp
Average Position of motif in Background55.5 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAGTGACCTA
NAGGTCANTGACCT-
 A C G T A C G T A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GGCCAGTGACCTA-
TGACCCAGTGACCTAC
 A C G T A C G T A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A A C G T
G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:GGCCAGTGACCTA
-----GTGACCTT
 A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A
A C G T A C G T A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:GGCCAGTGACCTA
------TGACCT-
 A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.65
Offset:6
Orientation:reverse strand
Alignment:GGCCAGTGACCTA---
------TGACCTARTT
 A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GGCCAGTGACCTA--
--CNNTTGACCTTTG
 A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A A C G T A C G T
A C G T A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:GGCCAGTGACCTA---
------TGACCTTGAT
 A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GGCCAGTGACCTA------
-----TTGACCTANTTATN
 A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GGCCAGTGACCTA-
------TGACCTYA
 A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCCAGTGACCTA
ACTAGCCAATCA----
 A C G T A C G T A C G T A T C G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C G T A G T A C A G T C C G A T C T G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T