Information for 7-CCAATGGCCT (Motif 12)

G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T
Reverse Opposite:
C G T A A C T G A C T G G T A C A G T C C T G A A G C T A C G T C T A G A C T G
p-value:1e-10
log p-value:-2.381e+01
Information Content per bp:1.848
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif85.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets52.1 +/- 26.6bp
Average Position of motif in Background50.7 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCAATGGCCT
AGCCAATCGG--
 A C G T A C G T G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCAATGGCCT
GTTAATGGCC-
 A C G T G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCAATGGCCT--
----AGGCCTAG
 G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCAATGGCCT-
AGGTCANTGACCTN
 A C G T A C G T A C G T G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCAATGGCCT
-YAACBGCC-
 G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T
A C G T A G C T C G T A C G T A A G T C A G T C A C T G G A T C G A T C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CCAATGGCCT--
----TGACCTYA
 G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAATGGCCT
VRAACAATGG---
 A C G T A C G T A C G T G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAATGGCCT
CCAACTGCCA
 G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCAATGGCCT
AACAAAGG---
 A C G T G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCAATGGCCT
RACAAWGG---
 A C G T G T A C A G T C G T C A C T G A A G C T A C T G A C T G T G A C A G T C C G A T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T