Information for 4-GGCCATTTCC (Motif 4)

T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C
Reverse Opposite:
A C T G A C T G G T C A C T G A G T C A A C G T A C T G A T C G A T G C A G T C
p-value:1e-27
log p-value:-6.257e+01
Information Content per bp:1.839
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.48%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets45.3 +/- 29.8bp
Average Position of motif in Background41.8 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GGCCATTTCC
GGGAATTTCC
 T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGCCATTTCC
GGGAATTTCC
 T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCCATTTCC
GGCCATTAAC
 T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGCCATTTCC
GGGGATTTCC
 T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GGCCATTTCC----
----ATTTCCTGTN
 T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

YY2/MA0748.1/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGCCATTTCC
GTCCGCCATTA--
 A C G T A C G T A C G T T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGCCATTTCC-
NGGGGATTTCCC
 A C G T T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGCCATTTCC
GGGGATTTCC
 T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

YY1/MA0095.2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GGCCATTTCC
GCNGCCATCTTG
 A C G T A C G T T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GGCCATTTCC----
--NNAYTTCCTGHN
 T A C G A T C G A T G C G T A C G T C A A C G T A G C T A C G T A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G T C C T G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G G A C T A C G T